Base by Base
Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Jaksot(462)

332: When Chromatin Filters Force: Age, AP-1, and Fibroblast Mechanotransduction

332: When Chromatin Filters Force: Age, AP-1, and Fibroblast Mechanotransduction

Liao Y et al., PNAS - Human dermal fibroblasts from young and old donors were embedded in 3D collagen and exposed to mechanical tension and TGF-β. Combining bulk RNA‑seq, ATAC‑seq, imaging, and pertur...

2 Huhti 22min

331: Bi-allelic NDUFA5 variants and complex I mitochondriopathy

331: Bi-allelic NDUFA5 variants and complex I mitochondriopathy

Tan et al et al., The American Journal of Human Genetics - This report identifies bi-allelic NDUFA5 variants in four individuals from three families causing an isolated mitochondrial complex I deficie...

31 Maalis 26min

330: 5ULTRA: Mapping 5′ UTR variants that alter protein translation

330: 5ULTRA: Mapping 5′ UTR variants that alter protein translation

Chaldebas M et al., The American Journal of Human Genetics - Chaldebas et al. present 5ULTRA, a computational pipeline that integrates uORF databases, Kozak-motif features, splicing prediction, and a ...

30 Maalis 22min

329: Large future genetic diversity losses predicted despite habitat protection

329: Large future genetic diversity losses predicted despite habitat protection

Mualim KS et al., Proceedings of the National Academy of Sciences - This study develops spatiotemporal population-genetic models calibrated with genomic data to predict how habitat loss and fragmentat...

30 Maalis 22min

328: Variant selection boosts R2 for haptoglobin (HP) in cis‑Mendelian randomization

328: Variant selection boosts R2 for haptoglobin (HP) in cis‑Mendelian randomization

Zhou A et al., Human Genetics and Genomics Advances - Comparing LD‑pruning, COJO, SuSiE and PCA in haptoglobin (HP) cis‑region data, the study finds including non‑lead variants substantially increases...

27 Maalis 23min

327: Bi-allelic ATG12 variants impair ATG12-ATG5 conjugation, LC3 lipidation and neural development

327: Bi-allelic ATG12 variants impair ATG12-ATG5 conjugation, LC3 lipidation and neural development

Lambton J et al., The American Journal of Human Genetics - Bi-allelic ATG12 variants disrupt ATG12‑ATG5 conjugation and LC3 lipidation, impairing autophagy in patient cells and model systems and causi...

27 Maalis 19min

326: DUO-1 protects REC-8 cohesin and synaptonemal complex stability in Caenorhabditis elegans meiosis

326: DUO-1 protects REC-8 cohesin and synaptonemal complex stability in Caenorhabditis elegans meiosis

Strand LG et al., Proc. Natl. Acad. Sci. U.S.A - In C. elegans germline, the deubiquitinase DUO-1 is required for assembly and active maintenance of the synaptonemal complex and REC-8 cohesin, prevent...

25 Maalis 24min

325: cis-pcQTL mapping reveals allelic proxitropy across neighboring human genes

325: cis-pcQTL mapping reveals allelic proxitropy across neighboring human genes

Lawrence et al., The American Journal of Human Genetics - Using a cis-principal-component (pcQTL) approach in human GTEx tissues, the authors uncover novel multi-gene regulatory variants and 33% more ...

24 Maalis 23min

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