228: Two non-competing H3N2 stem antibodies reveal evolving antigenicity
Base by Base14 Dec 2025

228: Two non-competing H3N2 stem antibodies reveal evolving antigenicity

Gopal AB et al., Nat Commun - Structural and functional characterization of two group 2 H3 HA stem antibodies, 2F02 and AG2-G02, shows distinct non-overlapping epitopes, protection in mice, and antigenic changes driven by HA2 position 32 that limit AG2-G02 binding. Key terms: influenza H3N2, hemagglutinin stem, broadly neutralizing antibodies, antigenic evolution, vaccine design.

Study Highlights:
Cryo-EM structures show 2F02 targets the central stem epitope while AG2-G02 targets the lower stem epitope and the two can bind concurrently to an HA trimer. Both antibodies neutralize diverse H3 strains in vitro and provide prophylactic protection in mice, with Fc-mediated effector functions contributing to in vivo efficacy. AG2-G02 binding is lost to recent human H3N2 HAs carrying R32 at HA2, whereas T32 or I32 permit binding. Human plasma binding profiles mirror the historical shift from T32 to I32 to R32, indicating altered population antigenicity of the lower stem over time.

Conclusion:
Natural evolution at HA2 position 32 has changed the antigenicity of the H3N2 HA lower stem, impacting binding of certain group 2 stem antibodies and informing vaccine design strategies

Music:
Enjoy the music based on this article at the end of the episode.

First author:
Gopal AB

Journal:
Nat Commun

DOI:
10.1038/s41467-025-65595-1

Reference:
Gopal AB, Lv H, Ouyang WO, Teo QW, Luo Y, Tang YS, Luo M, Mok CKP, Wu NC. Characterization of two non-competing antibodies to influenza H3N2 hemagglutinin stem reveals its evolving antigenicity. Nat Commun. 2025;16:10557. https://doi.org/10.1038/s41467-025-65595-1

License:
This episode is based on an open-access article published under the Creative Commons Attribution 4.0 International License (CC BY 4.0) – https://creativecommons.org/licenses/by/4.0/

Support:
Base by Base – Stripe donations: https://donate.stripe.com/7sY4gz71B2sN3RWac5gEg00

Official website https://basebybase.com

On PaperCast Base by Base you’ll discover the latest in genomics, functional genomics, structural genomics, and proteomics.

Episode link: https://basebybase.com/episodes/h3n2-stem-antibodies-evolution

QC:
This episode was checked against the original article PDF and publication metadata for the episode release published on 2025-12-14.

QC Scope:
- article metadata and core scientific claims from the narration
- excludes analogies, intro/outro, and music
- transcript coverage: Audited sections discussing: identification and epitopes of AG2-G02 and 2F02; structural/functional characterization; concurrent binding to an HA trimer; antigenic evolution at HA2 position 32; Fc-mediated protection in vivo; serological/population memory implications; vaccine-design implications.
- transcript topics: Identification and non-overlapping epitopes of AG2-G02 (lower stem) and 2F02 (central stem); Cryo-EM structural analysis and concurrent binding to an HA trimer; Antigenic evolution at HA2 position 32 (T32, I32, R32) and its effect on binding; In vivo Fc-mediated protection and importance of Fc effector functions; Serological analysis across pre-2003 adults, post-2011 adults, and post-2011 infants; Implications for universal influenza vaccine design targeting multiple stem epitopes

QC Summary:
- factual score: 10/10
- metadata score: 10/10
- supported core claims: 7
- claims flagged for review: 0
- metadata checks passed: 4
- metadata issues found: 0

Metadata Audited:
- article_doi
- article_title
- article_journal
- license

Factual Items Audited:
- AG2-G02 targets the lower stem epitope; 2F02 targets the central stem epitope; epitopes are distinct and non-overlapping
- AG2-G02 and 2F02 can bind concurrently to the same HA trimer (non-competitive binding with six Fabs on a single trimer)

Det här avsnittet är hämtat från ett öppet RSS-flöde och publiceras inte av Podme. Det kan innehålla reklam.

Avsnitt(445)

444: Many-eyes or Sentinels? How Cost Curvature Shapes Collective Vigilance

444: Many-eyes or Sentinels? How Cost Curvature Shapes Collective Vigilance

Pilgrim C et al., PNAS - A minimal analytical model shows that whether animal groups adopt distributed low-level vigilance (many-eyes) or concentrated high-vigilance roles (sentinels) depends on how i...

19 Aug 24min

443: 5D‑ASO boosts exon 51 skipping and restores dystrophin in DMD models

443: 5D‑ASO boosts exon 51 skipping and restores dystrophin in DMD models

Feng P et al., PNAS - This paper describes a bipartite antisense oligonucleotide (5D‑ASO) design that appends a short 5′ splice site decoy tail to improve exon skipping, demonstrating robust efficacy ...

18 Aug 19min

442: When pumps go missing: Ca2+ control of PMCA2 in Tmc1 deafness mutants

442: When pumps go missing: Ca2+ control of PMCA2 in Tmc1 deafness mutants

Rolseth AB et al., Proceedings of the National Academy of Sciences (PNAS) - This study links reduced Ca2+ entry through mutant TMC1 mechanotransducer channels to decreased PMCA2 pump density in outer ...

17 Aug 22min

441: Evolutionary mapping of Cav1.3 functional sites

441: Evolutionary mapping of Cav1.3 functional sites

Tang X et al., PNAS - The authors apply an evolutionary sequence-covariation model to the Cav1.3 (CACNA1D) α1-subunit, map predicted pathogenicity onto structural models, and validate five predicted s...

14 Aug 24min

440: DENV-4: Suppressing DNA Repair and Causing Genome Damage

440: DENV-4: Suppressing DNA Repair and Causing Genome Damage

Lamkina EN et al., PNAS - This episode reviews a PNAS brief report showing that DENV-4 infection induces marked DNA damage in infected cells while broadly suppressing transcription of DNA repair pathw...

12 Aug 23min

439: Coembedding Sequence and Structure: CLSS Maps the Protein Universe

439: Coembedding Sequence and Structure: CLSS Maps the Protein Universe

Longo LM et al., PNAS - This episode summarizes a PNAS study introducing CLSS, a contrastive two-tower protein language model that coembeds domain sequences, structures, and subsequences into a shared...

11 Aug 23min

438: Mapping AIRE: a proactive atlas of 9,790 missense variants

438: Mapping AIRE: a proactive atlas of 9,790 missense variants

Axakova A et al., The American Journal of Human Genetics - Axakova et al. generated a variant effect map for AIRE using an insulin‑promoter GFP reporter in HEK293 cells to measure the functional impac...

10 Aug 24min

437: Cell villages and Dirichlet modeling map human cell fitness genetics

437: Cell villages and Dirichlet modeling map human cell fitness genetics

Hanson C et al., The American Journal of Human Genetics - Hanson et al. combine pooled multi-donor human neural progenitor cell "villages" with Townlet, a hierarchical Dirichlet regression model, to e...

9 Aug 28min

Populärt inom Vetenskap

dumma-manniskor
p3-dystopia
allt-du-velat-veta
hacka-livet
rss-vetenskapsradion
ufo-sverige
svd-nyhetsartiklar
bildningspodden
rss-vetenskapsradion-2
barnpsykologerna
rss-spraket
det-morka-psyket
halsorevolutionen
vetenskapsradion
medicinvetarna
ufo-sverige-2
rss-ufobortom-rimligt-tvivel
paranormalt-med-caroline-giertz
sexet
rss-kriminologerna