Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Avsnitt(444)

338: WDHD1 and Microcephalic Primordial Dwarfism

338: WDHD1 and Microcephalic Primordial Dwarfism

Tibbe D et al., The American Journal of Human Genetics - This study identifies bi-allelic hypomorphic WDHD1 variants in 17 subjects with a clinical spectrum from fetal lethality to microcephalic primo...

10 Apr 21min

337: ND-CNVs and internalizing–cardiometabolic multimorbidity

337: ND-CNVs and internalizing–cardiometabolic multimorbidity

Katzourou IK et al., The American Journal of Human Genetics - Population analysis of ~459,000 UK Biobank participants shows that carriers of neurodevelopmental CNVs (ND-CNVs) have higher odds of co-oc...

8 Apr 22min

336: Measuring disease likelihood in genomic ascertainment

336: Measuring disease likelihood in genomic ascertainment

Sapp JC et al., The American Journal of Human Genetics - A longitudinal study of recipients of medically actionable secondary genomic findings develops a Bayesian approach that integrates variant, fam...

7 Apr 24min

335: Altai Neandertal Genome Reveals Deep Population Structure

335: Altai Neandertal Genome Reveals Deep Population Structure

Massilania D et al., PNAS - We summarize a PNAS study reporting a ~37× genome from a ~110,000-year-old male Neandertal (Denisova 17) from Denisova Cave. The genome shows D17 is closely related to an e...

5 Apr 23min

334: LINE-1 Recombination with Diverse RNAs

334: LINE-1 Recombination with Diverse RNAs

Law C-T et al., Cell Genomics - Law and Burns introduce TiMEstamp, a comparative-genomics pipeline that dates LINE-1 insertions from multiple sequence alignments and discovers hundreds of LINE-1 chime...

5 Apr 21min

333: Holistic determination of cfDNA ends

333: Holistic determination of cfDNA ends

Jiang P et al., Cell Genomics - This episode reviews a Cell Genomics study that uses ssDNA '2-end' and novel '4-end' sequencing to profile native 5′ and 3′ termini of plasma cfDNA. The work identifies...

4 Apr 24min

332: When Chromatin Filters Force: Age, AP-1, and Fibroblast Mechanotransduction

332: When Chromatin Filters Force: Age, AP-1, and Fibroblast Mechanotransduction

Liao Y et al., PNAS - Human dermal fibroblasts from young and old donors were embedded in 3D collagen and exposed to mechanical tension and TGF-β. Combining bulk RNA‑seq, ATAC‑seq, imaging, and pertur...

2 Apr 22min

331: Bi-allelic NDUFA5 variants and complex I mitochondriopathy

331: Bi-allelic NDUFA5 variants and complex I mitochondriopathy

Tan et al et al., The American Journal of Human Genetics - This report identifies bi-allelic NDUFA5 variants in four individuals from three families causing an isolated mitochondrial complex I deficie...

31 Mars 26min

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