58: Cell competition shapes depletion of aneuploid cells
Base by Base28 Jun 2025

58: Cell competition shapes depletion of aneuploid cells

Fusari E et al., Cell Genomics - Fusari et al. use FLP/FRT–based mosaic methods in Drosophila imaginal epithelia to generate defined segmental monosomies and trisomies and quantify their immediate effects on clonal growth, survival, and interclonal interactions. Key terms: aneuploidy, cell competition, Drosophila, segmental monosomy, trisomy.

Study Highlights:
Using RS- and TSG-FRT tools, the authors show that segmental monosomies of a few hundred genes commonly compromise clonal growth and present signs of outcompetition, whereas trisomies spanning up to ~1,500 genes often lack major autonomous growth defects. Haploinsufficiency of single loci (e.g., RpL26) or cumulative haploinsufficiency of discrete gene sets underlies many monosomy phenotypes. Complementary trisomic clones can exacerbate or rescue monosomy-driven loss, revealing distinct interaction modes including super-competition and lethal competition. The Xrp1–TOR–apoptosis axis and proteotoxic stress partially explain elimination of Rp-containing monosomies.

Conclusion:
Cell-to-cell interactions between complementary aneuploid clones, together with single-gene and cumulative haploinsufficiency, determine the in vivo depletion of aneuploid cells, highlighting cell competition as a key mechanism shaping aneuploid cell fate.

Music:
Enjoy the music based on this article at the end of the episode.

Article title:
Depletion of aneuploid cells is shaped by cell-to-cell interactions

First author:
Fusari E

Journal:
Cell Genomics

DOI:
10.1016/j.xgen.2025.100894

Reference:
Fusari E, Muzzopappa M, Gracia J, Milán M. Depletion of aneuploid cells is shaped by cell-to-cell interactions. Cell Genomics. 2025;5:100894. https://doi.org/10.1016/j.xgen.2025.100894

License:
This episode is based on an open-access article published under the Creative Commons Attribution 4.0 International License (CC BY 4.0) – https://creativecommons.org/licenses/by/4.0/

Support:
Base by Base is independent and ad-free — no sponsors, no paywall. If an episode was worth your time, chip in and keep the papers audited and the original songs coming:
❤️ Support monthly: https://buy.stripe.com/cNifZhclVebvagk2JDgEg01
☕ One-time donation: https://donate.stripe.com/7sY4gz71B2sN3RWac5gEg00
More at basebybase.com

On PaperCast Base by Base you'll discover the latest in genomics, functional genomics, structural genomics, and proteomics.

Episode link: https://basebybase.com/episodes/papercast-base-by-base-58

QC:
This episode was checked against the original article PDF and publication metadata for the episode release published on 2025-06-28.

QC Scope:
- article metadata and core scientific claims from the narration
- excludes analogies, intro/outro, and music
- transcript coverage: Audited the transcript sections describing the in vivo mosaic aneuploidy model in Drosophila imaginal discs, the Twin Spot Generator (TSG) and RS-FRT approaches, cell competition modalities (lethal, super-competition, compensatory proliferation), region-specific monosomy/trisomy findings (regions 1 and 2), and implicat
- transcript topics: In vivo mosaic aneuploidy in Drosophila imaginal discs; Twin Spot Generator (TSG) and RS-FRT recombination; Segmental monosomies and trisomies effects on growth; Cell competition: lethal competition, super-competition, compensatory proliferation; Region 1 (72A1–73A5) and flower gene–mediated competition; Region 2: compensatory proliferation and martyr signaling

QC Summary:
- factual score: 10/10
- metadata score: 10/10
- supported core claims: 6
- claims flagged for review: 0
- metadata checks passed: 4
- metadata issues found: 0

Metadata Audited:
- article_doi
- article_title
- article_journal
- license

Factual Items Audited:
- Mo...

Denne episoden er hentet fra en åpen RSS-feed og er ikke publisert av Podme. Den kan derfor inneholde annonser.

Episoder(444)

441: Evolutionary mapping of Cav1.3 functional sites

441: Evolutionary mapping of Cav1.3 functional sites

Tang X et al., PNAS - The authors apply an evolutionary sequence-covariation model to the Cav1.3 (CACNA1D) α1-subunit, map predicted pathogenicity onto structural models, and validate five predicted s...

14 Aug 24min

440: DENV-4: Suppressing DNA Repair and Causing Genome Damage

440: DENV-4: Suppressing DNA Repair and Causing Genome Damage

Lamkina EN et al., PNAS - This episode reviews a PNAS brief report showing that DENV-4 infection induces marked DNA damage in infected cells while broadly suppressing transcription of DNA repair pathw...

12 Aug 23min

440: DENV-4: Suppressing DNA Repair and Causing Genome Damage

440: DENV-4: Suppressing DNA Repair and Causing Genome Damage

Lamkina EN et al., PNAS - This episode reviews a PNAS brief report showing that DENV-4 infection induces marked DNA damage in infected cells while broadly suppressing transcription of DNA repair pathw...

12 Aug 23min

439: Coembedding Sequence and Structure: CLSS Maps the Protein Universe

439: Coembedding Sequence and Structure: CLSS Maps the Protein Universe

Longo LM et al., PNAS - This episode summarizes a PNAS study introducing CLSS, a contrastive two-tower protein language model that coembeds domain sequences, structures, and subsequences into a shared...

11 Aug 23min

438: Mapping AIRE: a proactive atlas of 9,790 missense variants

438: Mapping AIRE: a proactive atlas of 9,790 missense variants

Axakova A et al., The American Journal of Human Genetics - Axakova et al. generated a variant effect map for AIRE using an insulin‑promoter GFP reporter in HEK293 cells to measure the functional impac...

10 Aug 24min

437: Cell villages and Dirichlet modeling map human cell fitness genetics

437: Cell villages and Dirichlet modeling map human cell fitness genetics

Hanson C et al., The American Journal of Human Genetics - Hanson et al. combine pooled multi-donor human neural progenitor cell "villages" with Townlet, a hierarchical Dirichlet regression model, to e...

9 Aug 28min

436: KIAP4 and the ARND family: building the Leishmania adhesion plaque

436: KIAP4 and the ARND family: building the Leishmania adhesion plaque

Owino BO et al., PNAS - Using TurboID proximity proteomics and microscopy, researchers identify KIAP4 as the canonical member of a conserved Adhesion Related NTPase-like Domain (ARND) family that loca...

8 Aug 24min

435: E. coli TGT binds two tRNAs — cryo-EM reveals dual engagement

435: E. coli TGT binds two tRNAs — cryo-EM reveals dual engagement

Ember M et al., PNAS - This episode examines a cryo-EM study of Escherichia coli tRNA-guanine transglycosylase (TGT) that solves the enzyme structure and its covalent intermediate with tRNATyr. Unexpe...

7 Aug 19min

Populært innen Vitenskap

fastlegen
tingenes-tilstand
romkapsel
jss
liberal-halvtime
rekommandert
villmarksliv
abels-tarn
dekodet-2
vett-og-vitenskap-med-gaute-einevoll
sinnsyn
fjellsportpodden
rss-overskuddsliv
rss-rekommandert
tomprat-med-gunnar-tjomlid
rss-inn-til-kjernen-med-sunniva-rose
hva-er-greia-med
rss-nysgjerrige-norge
diagnose
kvinnehelsepodden