Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

84: NR6A1 and a newly described oculo‑vertebral‑renal (OVR) syndrome

84: NR6A1 and a newly described oculo‑vertebral‑renal (OVR) syndrome

Nature Communications - Genome sequencing identified rare NR6A1 variants in families with colobomatous microphthalmia, missing vertebrae and congenital kidney anomalies. In silico modeling, cell assay...

23 Jul 202517min

83: Dup15q in Focus: Single-cell traces of metabolic and synaptic change

83: Dup15q in Focus: Single-cell traces of metabolic and synaptic change

Perez Y et al., Nature Communications - This episode reviews a single-cell and spatial transcriptomic study of dup15q syndrome using patient postmortem cortex and hiPSC-derived cortical organoids. The...

22 Jul 202525min

82: JAK2 inhibition drives RAS clonal selection in myelofibrosis

82: JAK2 inhibition drives RAS clonal selection in myelofibrosis

Maslah N et al., Nature Communications - Translational study showing ruxolitinib and JAK2 suppression select for RAS pathway–mutant clones in myelofibrosis, enhancing their fitness via MAPK activation...

21 Jul 202519min

81: Pharmacogenetics in a Large Chinese Cohort

81: Pharmacogenetics in a Large Chinese Cohort

Wei C-Y et al et al., Nature Communications - Retrospective analysis of 486,956 Han Chinese from the Taiwan Precision Medicine Initiative evaluated prevalence and clinical impact of actionable pharmac...

20 Jul 202521min

80: Genome sequencing predicts outcomes after congenital cardiac surgery

80: Genome sequencing predicts outcomes after congenital cardiac surgery

Watkins WS et al et al., Nature Communications - A prospective observational study of 2,253 Pediatric Cardiac Genomics Consortium patients shows that whole-exome sequencing combined with AI genome int...

19 Jul 202516min

79: Cross-population GWAS and Proteomics Reveal AF Mechanisms and Better Risk Prediction

79: Cross-population GWAS and Proteomics Reveal AF Mechanisms and Better Risk Prediction

Nature Communications - A large cross-population GWAS meta-analysis (168,007 AF cases) integrated with proteomic data identifies hundreds of AF loci, implicates cardiac and TGF-β pathways, finds causa...

18 Jul 202517min

78: Unloading Lipids: TTYH2 Meets APOE

78: Unloading Lipids: TTYH2 Meets APOE

Sukalskaia A et al., Nature - This Nature study identifies APOE as an interaction partner of human TTYH2, maps their endosomal colocalization and binding site by cryo-EM, and shows that TTYH2 accelera...

17 Jul 202514min

77: REX: a range extender for long-distance enhancer activity

77: REX: a range extender for long-distance enhancer activity

Bower G et al., Nature - This paper identifies a conserved cis element, REX, and a [C/T]AATTA homeodomain motif signature that are necessary and sufficient to convert short- and medium-range limb enha...

16 Jul 202516min

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