Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

12: MUTYH's allosteric [4Fe-4S] network

12: MUTYH's allosteric [4Fe-4S] network

Trasviña-Arenas CH et al., Nature Communications - This episode explores a 2025 study that reports the first human MUTYH structure bound to a transition state analog and functional profiling of cancer...

19 Apr 202516min

11: Mitochondrial Weakness: Targeting Dnmt3a-Mutant Clonal Hematopoiesis

11: Mitochondrial Weakness: Targeting Dnmt3a-Mutant Clonal Hematopoiesis

Nature Communications (2025) 16:3306 et al., Nature Communications - This study shows that Dnmt3a-mutant hematopoietic stem and progenitor cells (HSPCs) sustain elevated mitochondrial membrane potenti...

19 Apr 202519min

10: Assessing DNA variants for antisense oligonucleotide therapy

10: Assessing DNA variants for antisense oligonucleotide therapy

Cheerie D et al., The American Journal of Human Genetics - This episode summarizes the N1C VARIANT consensus guidelines (version 1.0) that define a framework to evaluate pathogenic DNA variants for el...

18 Apr 202519min

9: MrDAG and the causal architecture of mental health

9: MrDAG and the causal architecture of mental health

Zuber V et al., The American Journal of Human Genetics - Zuber et al. introduce MrDAG, a Bayesian causal graphical model that combines Mendelian randomization, structure learning, and interventional c...

18 Apr 202520min

8: A structural variation reference for medical and population genetics

8: A structural variation reference for medical and population genetics

Collins RL et al et al., Nature - This episode reviews gnomAD-SV, a sequence-resolved reference of structural variants from 14,891 genomes that catalogs 433,371 SVs (335,470 high-quality) and integrat...

17 Apr 202524min

7: Using high-resolution variant frequencies to empower clinical genome interpretation

7: Using high-resolution variant frequencies to empower clinical genome interpretation

Whiffin N et al., Genetics in Medicine - A statistical framework uses large reference allele-frequency data (ExAC) together with disease prevalence, heterogeneity, penetrance, and sampling variance to...

17 Apr 202519min

6: TRMT1, tRNA m2,2G, and Intellectual Disability

6: TRMT1, tRNA m2,2G, and Intellectual Disability

Efthymiou S et al., The American Journal of Human Genetics - A global cohort study identifies bi-allelic TRMT1 variants that cause developmental delay and intellectual disability, links those variants...

17 Apr 202526min

5: Promoter Footprints Predicting Preterm Birth

5: Promoter Footprints Predicting Preterm Birth

Guo Z et al., PLOS Medicine - Large multi-center case-control study shows promoter-region nucleosome footprints in plasma cell-free DNA can predict spontaneous preterm birth. The authors developed PTe...

16 Apr 202514min

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