Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

268: M493I in human β-cardiac myosin: SRX disruption, slow ADP release, and enhanced actin attachment

268: M493I in human β-cardiac myosin: SRX disruption, slow ADP release, and enhanced actin attachment

Cail RC et al., Proc. Natl. Acad. Sci. U.S.A. 2025.122:e2521561122 - Recombinant human β-cardiac myosin M493I studied by optical trapping and stopped-flow kinetics disrupts the super-relaxed state and...

23 Jan 22min

267: DNA base-pair opening modes and soliton-like loops revealed by hydrogen exchange

267: DNA base-pair opening modes and soliton-like loops revealed by hydrogen exchange

Englander SW et al., Proc. Natl. Acad. Sci. U.S.A. 2026.123:e2520855122 - Hydrogen exchange (H-T and NMR H-H) on DNA and RNA reveals two distinct base-pair opening modes: single-base microsecond openi...

22 Jan 21min

266: TOP1α and TOP3β Differentially Regulate HPV31 Replication via R-loops and DNA Breaks

266: TOP1α and TOP3β Differentially Regulate HPV31 Replication via R-loops and DNA Breaks

Vatsa A et al., Proc. Natl. Acad. Sci. U.S.A. 2026.123:e2526296123 - In HPV31-positive keratinocytes (CIN612), TOP1α and TOP3β are upregulated and required for viral transcription and replication, act...

21 Jan 17min

265: ANTSR lncRNA and the conserved multiallelic sex-determining locus across Aculeata

265: ANTSR lncRNA and the conserved multiallelic sex-determining locus across Aculeata

Yu C et al., Proc. Natl. Acad. Sci. U.S.A. 2026.123:e2522417123 - Genetic mapping and comparative genomics show the lncRNA ANTSR multiallelic locus in Aculeata directs female development via heterozyg...

20 Jan 17min

264: Single-TF rejuvenation: EZH2, E2F3, STAT3, ZFX identified by TRDP/Perturb-seq rejuvenate human fibroblasts and mouse liver

264: Single-TF rejuvenation: EZH2, E2F3, STAT3, ZFX identified by TRDP/Perturb-seq rejuvenate human fibroblasts and mouse liver

Sengstack J et al., Proc. Natl. Acad. Sci. U.S.A. 2026.123:e2515183123 - TRDP with Perturb-seq in human fibroblasts found that manipulating TFs (EZH2, E2F3, STAT3, ZFX) reversed aging hallmarks, and E...

19 Jan 19min

263: Bifacial γPNA triplets target rCUG repeats and displace MBNL1 in Myotonic Dystrophy type 1

263: Bifacial γPNA triplets target rCUG repeats and displace MBNL1 in Myotonic Dystrophy type 1

Perera J et al., Proc. Natl. Acad. Sci. U.S.A. 2026.123:e2507065123 - Gamma-PNA triplet ligands with Janus bases selectively bind expanded rCUG repeats, displace MBNL1, and show length-dependent coope...

18 Jan 20min

262: Human Langerhans cells reprogrammed by tick saliva (CXCR4/CCR7 migration and IDO1/IRF4 tolerance)

262: Human Langerhans cells reprogrammed by tick saliva (CXCR4/CCR7 migration and IDO1/IRF4 tolerance)

Strobl et al., Nature Communications - Human epidermal Langerhans cells exposed to Ixodes ricinus tick saliva and Borrelia burgdorferi adopt a tolerogenic state with CXCR4/CCR7-driven emigration that ...

17 Jan 21min

261: MHz-XPCS reveals anomalous ferritin diffusion and nanoscale cage trapping

261: MHz-XPCS reveals anomalous ferritin diffusion and nanoscale cage trapping

Girelli et al., Nature Communications - MHz-XPCS of ferritin solutions at EuXFEL shows anomalous, cage-trapped protein diffusion with reduced long-time transport and ~1.2 nm rattling at high concentra...

16 Jan 16min

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