Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(463)

151: EQA of ctDNA Molecular Tumor Profiling in the COIN Consortium

151: EQA of ctDNA Molecular Tumor Profiling in the COIN Consortium

van der Leest P et al., Clinical Chemistry - An interlaboratory external quality assessment across 16 laboratories in the Dutch COIN consortium evaluated how diverse (pre)analytical workflows and anal...

28 Sep 202516min

150: Patrilineal segmentary systems provide a peaceful explanation for the post‑Neolithic Y‑chromosome bottleneck

150: Patrilineal segmentary systems provide a peaceful explanation for the post‑Neolithic Y‑chromosome bottleneck

Guyon L et al., Nature Communications - Forward-time simulations and coalescent inference show that variance in reproductive success among patrilineal descent groups combined with lineal fission can p...

27 Sep 202517min

149: Tracing ancient Y chromosome variation

149: Tracing ancient Y chromosome variation

Kivisild T et al., Hum Genet (2017) 136:529–546 - Review of how high-throughput sequencing of ancient human remains has enabled genome-scale study of male-specific Y chromosome variation, the methodol...

26 Sep 202515min

148: CHEK2 splice-site variants: minigene dissection

148: CHEK2 splice-site variants: minigene dissection

Sanoguera-Miralles L et al., Clinical Chemistry - This episode examines a minigene-based functional study of 52 CHEK2 splice-site variants from the BRIDGES project, reporting widespread splice disrupt...

25 Sep 202514min

147: Full-length ABO Haplotype Sequencing and Variant Resolution

147: Full-length ABO Haplotype Sequencing and Variant Resolution

Ying Y et al., Clinical Chemistry 71:4 (2025) 510–519 - This episode reviews a Clinical Chemistry study that developed an improved one-step ultra-long-range PCR with PCR suppression primers and PacBio...

24 Sep 202515min

146: Automated, Decentralized cfDNA Profiling for Targetable and Resistance Alterations

146: Automated, Decentralized cfDNA Profiling for Targetable and Resistance Alterations

Chan HT et al et al., Clinical Chemistry - This study evaluates an automated, decentralized cfDNA NGS workflow (Oncomine Precision Assay GX with the Genexus system) in 298 patients with advanced solid...

23 Sep 202515min

145: hs-MSI Validation: Detecting CMMRD and Pinpointing PMS2

145: hs-MSI Validation: Detecting CMMRD and Pinpointing PMS2

Marín F et al., Clinical Chemistry - This episode examines a validation study of a highly sensitive NGS-based microsatellite instability (hs-MSI) assay for diagnosing constitutional mismatch repair de...

22 Sep 202516min

144: Revising the age of the human chromosome 2 fusion

144: Revising the age of the human chromosome 2 fusion

Poszewiecka B et al., BMC Genomics (2022) 23:616 - This study presents an improved algorithm to compute the UBCS statistic and uses it to re-estimate the timing of the ancestral fusion that formed hum...

21 Sep 202517min

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