Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

140: SOD1 Variant Landscapes: Activity and Abundance Maps

140: SOD1 Variant Landscapes: Activity and Abundance Maps

Axakova A et al., The American Journal of Human Genetics - Axakova et al. produced comprehensive missense variant-effect maps for human SOD1 by assaying enzymatic activity in yeast and protein abundan...

17 Sep 202520min

139: MosCoverY: a coverage-based method to detect mosaic loss of Y

139: MosCoverY: a coverage-based method to detect mosaic loss of Y

Timonina V et al., The American Journal of Human Genetics - MosCoverY is a coverage-based method that estimates mosaic loss of the Y chromosome (mLOY) from exome or whole-genome sequencing by normaliz...

16 Sep 202514min

138: Social exposome and dementia in Latin America

138: Social exposome and dementia in Latin America

Migeot J et al., Nature Communications - Large multicenter study linking a multidimensional social exposome (education, food insecurity, finances, healthcare access, childhood experiences) to cognitio...

15 Sep 202519min

137: Rethinking RNA-binding proteins: riboregulation beyond the classics

137: Rethinking RNA-binding proteins: riboregulation beyond the classics

Hentze MW et al., Cell - A review that examines the expansion of the RNA-binding proteome, evaluates evidence for many non-canonical RBPs, and highlights riboregulation as an emerging mechanism by whi...

14 Sep 202525min

136: Gene context drift and RECODR: predicting targets to prevent cancer relapse

136: Gene context drift and RECODR: predicting targets to prevent cancer relapse

Jassim A et al., Cancer Cell - This episode summarizes Jassim et al.'s introduction of RECODR, a graph-embedding pipeline that measures gene co-expression context drift from sc/snRNA-seq to reveal dri...

13 Sep 202514min

135: Micronutrients and Modern Human Evolution

135: Micronutrients and Modern Human Evolution

Rees J et al., The American Journal of Human Genetics - Rees et al. analyze signatures of positive selection in 276 genes linked to 13 dietary micronutrients across 40 global populations (HGDP). Using...

12 Sep 202514min

134: Single-cell view of Barrett's esophagus and EAC

134: Single-cell view of Barrett's esophagus and EAC

Wenzel M et al., Cell Genomics - This episode reviews a single-cell transcriptional atlas comparing Barrett's esophagus, intestinal metaplasia, normal esophagus/gastric samples and esophageal adenocar...

11 Sep 202515min

133: Long-read meta-pangenomics links gut genomes to child growth

133: Long-read meta-pangenomics links gut genomes to child growth

Minich JJ et al., Cell - Minich et al. apply PacBio and Oxford Nanopore long‑read metagenomics to generate 986 complete metagenome‑assembled genomes from Malawian toddler fecal samples, then use pange...

10 Sep 202524min

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