Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

148: CHEK2 splice-site variants: minigene dissection

148: CHEK2 splice-site variants: minigene dissection

Sanoguera-Miralles L et al., Clinical Chemistry - This episode examines a minigene-based functional study of 52 CHEK2 splice-site variants from the BRIDGES project, reporting widespread splice disrupt...

25 Sep 202514min

147: Full-length ABO Haplotype Sequencing and Variant Resolution

147: Full-length ABO Haplotype Sequencing and Variant Resolution

Ying Y et al., Clinical Chemistry 71:4 (2025) 510–519 - This episode reviews a Clinical Chemistry study that developed an improved one-step ultra-long-range PCR with PCR suppression primers and PacBio...

24 Sep 202515min

146: Automated, Decentralized cfDNA Profiling for Targetable and Resistance Alterations

146: Automated, Decentralized cfDNA Profiling for Targetable and Resistance Alterations

Chan HT et al et al., Clinical Chemistry - This study evaluates an automated, decentralized cfDNA NGS workflow (Oncomine Precision Assay GX with the Genexus system) in 298 patients with advanced solid...

23 Sep 202515min

145: hs-MSI Validation: Detecting CMMRD and Pinpointing PMS2

145: hs-MSI Validation: Detecting CMMRD and Pinpointing PMS2

Marín F et al., Clinical Chemistry - This episode examines a validation study of a highly sensitive NGS-based microsatellite instability (hs-MSI) assay for diagnosing constitutional mismatch repair de...

22 Sep 202516min

144: Revising the age of the human chromosome 2 fusion

144: Revising the age of the human chromosome 2 fusion

Poszewiecka B et al., BMC Genomics (2022) 23:616 - This study presents an improved algorithm to compute the UBCS statistic and uses it to re-estimate the timing of the ancestral fusion that formed hum...

21 Sep 202517min

143: Modelling genetic 'outliers' in ancient Eurasia (S1E143)

143: Modelling genetic 'outliers' in ancient Eurasia (S1E143)

Skourtanioti E et al., Cell - This episode summarizes a population‑genomic analysis that models genetic outliers in ancient Eurasian samples, using PCA and admixture modeling to test source combinatio...

20 Sep 202518min

142: PALB2 ACMG/AMP Specifications

142: PALB2 ACMG/AMP Specifications

Richardson M et al., The American Journal of Human Genetics - An international HBOP Variant Curation Expert Panel developed PALB2-specific specifications of the 2015 ACMG/AMP variant-interpretation gu...

19 Sep 202516min

141: RetiGene: a gene atlas for inherited retinal diseases

141: RetiGene: a gene atlas for inherited retinal diseases

Rivolta C et al., The American Journal of Human Genetics - RetiGene is an expert‑curated, openly accessible atlas integrating variant data, bulk and single‑cell RNA‑seq, and functional annotations for...

18 Sep 202526min

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