Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

402: When Polygenic Scores Miss: Rare Variants in Misaligned Individuals

402: When Polygenic Scores Miss: Rare Variants in Misaligned Individuals

Baya N et al., The American Journal of Human Genetics 113, 1–19 (2026) - Baya et al. applied a misalignment framework to UK Biobank polygenic scores and exomes and found that individuals whose observe...

25 Jun 20min

401: LDB1 variants split neurodevelopmental outcomes by location and mechanism

401: LDB1 variants split neurodevelopmental outcomes by location and mechanism

Fluri R et al., The American Journal of Human Genetics - This episode examines a cohort study of 16 individuals with de novo LDB1 variants that reveals two overlapping but distinct neurodevelopmental ...

23 Jun 24min

400: Complete chromosome 21 centromere sequencing and Down syndrome

400: Complete chromosome 21 centromere sequencing and Down syndrome

Mastrorosa F et al., The American Journal of Human Genetics - Long-read assemblies and epigenetic mapping of chromosome 21 centromeres in families with trisomy 21 reveal centromere size diversity, two...

23 Jun 22min

399: Ménière disease: inner ear development and retinoic acid pathways

399: Ménière disease: inner ear development and retinoic acid pathways

Shi Z et al., The American Journal of Human Genetics - A large GWAS meta-analysis across five biobanks (8,969 cases, 1,962,542 controls) identifies five genome-wide significant loci for Ménière diseas...

22 Jun 21min

398: Modeling JAK2V617F Clonal Expansion in the General Population

398: Modeling JAK2V617F Clonal Expansion in the General Population

Snyder J et al., Proceedings of the National Academy of Sciences (PNAS) - Longitudinal VAF measurements from 67 JAK2V617F-positive participants in the Danish GESUS study were analyzed with a Moran-pro...

21 Jun 24min

397: SciPhy: Bayesian phylogenetics for sequential genetic lineage tracing

397: SciPhy: Bayesian phylogenetics for sequential genetic lineage tracing

Seidel et al., Nature Communications - SciPhy is a BEAST2-integrated Bayesian framework that models sequential CRISPR‑based insertion edits to jointly infer time-scaled single-cell lineage trees, edit...

20 Jun 23min

396: Physical homology recognition between DNA duplexes

396: Physical homology recognition between DNA duplexes

Stannard A et al., Proceedings of the National Academy of Sciences (PNAS) - This episode summarizes a PNAS study that uses a FRET-responsive DNA tweezers nanosensor to detect and quantify sequence-dep...

18 Jun 23min

395: Extended sequence context shapes mutational bias in Escherichia coli

395: Extended sequence context shapes mutational bias in Escherichia coli

Green R et al., PNAS - Collating >100,000 base-pair substitutions from 32 mutation-accumulation experiments, this study shows that sequence context well beyond adjacent bases — up to ±6 bp and even hu...

18 Jun 22min

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