Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

410: Nucleotide diversity is a poor predictor of short-term adaptive potential

410: Nucleotide diversity is a poor predictor of short-term adaptive potential

Abson KL et al., PNAS - A cross-species synthesis and theory paper showing that simple molecular diversity metrics poorly predict short-term adaptive potential. The authors compiled >2,100 quantitativ...

8 Jul 21min

409: A systems-level atlas of carbon-response transcriptional states in Escherichia coli

409: A systems-level atlas of carbon-response transcriptional states in Escherichia coli

Shin J et al., PNAS - This episode examines a large transcriptome compendium (PRECISE-NP881) that profiles E. coli K-12 MG1655 across 43 carbon substrates. Independent component analysis resolved 137 ...

7 Jul 27min

408: Tau, mitochondria, and the fusion switch

408: Tau, mitochondria, and the fusion switch

Tsakiria E et al., Proceedings of the National Academy of Sciences (PNAS) - Using Tau knockout mice and the C. elegans PTL-1 deletion, this study shows that loss of wild-type Tau promotes a conserved ...

6 Jul 24min

407: SLC11A2 withholds metals from Salmonella in the gut epithelium

407: SLC11A2 withholds metals from Salmonella in the gut epithelium

Norberg ES et al., Proceedings of the National Academy of Sciences - Using metal‑responsive fluorescent Salmonella reporters, calf intestinal loops, and CRISPR edited epithelial cells, this study show...

5 Jul 21min

406: Temperature & Age Shape Gut Susceptibility to HCoV-229E

406: Temperature & Age Shape Gut Susceptibility to HCoV-229E

Synowiec A et al., Proceedings of the National Academy of Sciences (PNAS) - This episode examines a PNAS study using fetal, pediatric, and adult human intestinal enteroids to show that physiological t...

1 Jul 19min

405: PRDM9 and the Hotspot Trade-off

405: PRDM9 and the Hotspot Trade-off

Úbeda F et al., Proceedings of the National Academy of Sciences (PNAS) - A population-genetic model explains why sequence-specific PRDM9-guided recombination hotspots can evolve and persist alongside ...

1 Jul 23min

404: RUNA Reveals Surface DNA on Exosomes

404: RUNA Reveals Surface DNA on Exosomes

Bošković F et al., Proceedings of the National Academy of Sciences - This study introduces RUNA, a reversible chemistry that selectively labels uridine/thymidine to map nucleic acids across membranes,...

30 Jun 21min

403: HRD-GIS Evidence for BRCA1/2 Variant Classification

403: HRD-GIS Evidence for BRCA1/2 Variant Classification

Schnaiter et al et al., The American Journal of Human Genetics - Schnaiter et al. pooled Myriad MyChoice HRD+ CDx results from four cohorts (4,943 HGOC tumors) to test whether tumor HRD-related genomi...

26 Jun 22min

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