Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(444)

394: Benchmarking LLMs for cfRNA biomarker discovery

394: Benchmarking LLMs for cfRNA biomarker discovery

Gaudio HA et al., Nature Communications - This episode examines a systematic benchmark of six commercial large language models applied to plasma cell-free RNA across three clinical cohorts, assessing ...

17 Jun 22min

393: Hidden Resistance: tNGS Reveals Rifampicin and Bedaquiline Resistance in Eswatini

393: Hidden Resistance: tNGS Reveals Rifampicin and Bedaquiline Resistance in Eswatini

Vambe D et al., Nature Communications - This study reports the programmatic introduction of targeted next-generation sequencing (tNGS) in Eswatini and shows that tNGS detected large amounts of rifampi...

17 Jun 21min

392: GWAS of Cocaine Self-Administration in Heterogeneous Stock Rats

392: GWAS of Cocaine Self-Administration in Heterogeneous Stock Rats

Lara MK et al et al., Nature Communications - Large GWAS in 836 outbred HS rats identifies six loci linked to cocaine self-administration traits, highlighting Ces1 carboxylesterase genes and other loc...

12 Jun 23min

391: The Kaufmann Protocol — Why We Age and How to Stop It

391: The Kaufmann Protocol — Why We Age and How to Stop It

Dr. Sandra Kaufmann, The Kaufmann Anti-Aging Institute - Dr. Sandra Kaufmann — physician, scientist and athlete — set out to understand aging and fight it with science. This episode is a guided overvi...

12 Jun 1h 6min

390: Daunorubicin, Mutual Destruction, and Layered Antiphage Defense

390: Daunorubicin, Mutual Destruction, and Layered Antiphage Defense

Gätgens C et al., PNAS - This episode examines how DNA-intercalating molecules like daunorubicin block bacteriophage infection at an early stage, causing an abortive-infection-like outcome via toxic p...

9 Jun 22min

389: Crotonylation impedes c-Myc oncogenic activity

389: Crotonylation impedes c-Myc oncogenic activity

PNAS - This study identifies crotonylation as a posttranslational modification of c-Myc that reduces its transcriptional and oncogenic activity. Key lysines K289 and K298 are crotonylated; loss of cro...

9 Jun 25min

388: Base by Base | Episode 388 — In situ CAR‑macrophage alleviates liver fibrosis

388: Base by Base | Episode 388 — In situ CAR‑macrophage alleviates liver fibrosis

Huang X et al., Proceedings of the National Academy of Sciences (PNAS) - This episode summarizes a PNAS study reporting CD163‑targeted lipid nanoparticles that deliver FAP‑specific CAR mRNA to liver m...

9 Jun 21min

387: Homotypic Dengue Reinfections and Long-Term Antibody Decay

387: Homotypic Dengue Reinfections and Long-Term Antibody Decay

Andrade J et al., PNAS - Analysis of three long-term cohorts in the Philippines and Thailand shows antibody titers wane over years and that homotypic dengue reinfections are common and required to exp...

9 Jun 21min

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